PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04482_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 491aa    MW: 54282.7 Da    PI: 9.1459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04482_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0595115323
                                 ETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                 C++Cgk F r  nL+ H r H
  Cotton_A_04482_BGI-A2_v1.0  95 CEICGKGFQRDQNLQLHRRGH 115
                                 *******************88 PP

2zf-C2H212.80.00036169191123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC +C+k++  +s+ k H +t+
  Cotton_A_04482_BGI-A2_v1.0 169 WKCDKCSKRYAVQSDWKAHSKTC 191
                                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-692115No hitNo description
Gene3DG3DSA:3.30.160.604.3E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.48993115IPR007087Zinc finger, C2H2
SMARTSM003550.07693115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.44E-6164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MTEESISDVF VINPIPGSNP PVAKKKRNLP GTPGKCLLFP PISNFSEDSL IVIFVNLMTK  60
CCLRFPHMIW VIADPEAEVI ALSPKTLMAT NRFLCEICGK GFQRDQNLQL HRRGHNLPWK  120
LKQRSTKEVR KRVYVCPEKT CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKT CGTREYKCDC GTLFSRRDSF ITHRAFCDAL AEETARVNAA SSMHSNINHH  240
LIGNQIGPPM AQHFPPIFKQ ISSNDATIDQ TRCGLSLWMG QASQFHDSIP KSLQEIHQFG  300
SVISRSIYSD LLVSTSNPPA SGYHLNWVLG NKVSSSHAEE LTSTSLPLNN VKENGAQLVS  360
VPSLLSTQKL HSHQPTSANM SATALLQKAA QIGATSTDTS FHGSLGTKCS NSQIQDGNKY  420
SGLYVSNTPP TSFGSDLENS ANDISNLNQL QMQPAKRQRL QNEDSSGGQT RDFLGVGVLP  480
ICHPSSINGW T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8896657e-79KT889665.1 Corchorus olitorius cultivar Sudan Green microsatellite JROm311 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438195.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-143IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0D2PVM30.0A0A0D2PVM3_G
STRINGVIT_12s0028g03030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-144C2H2 family protein